PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024006-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 621aa    MW: 71912.7 Da    PI: 9.205
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024006-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.91.6e-1337127190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleH 85 
                            kfY+ YAk  GF+vr+ ++++  ++g++ ++   C+++g  +  + + + + +t++   t+Cka+ + +      +g +++ ++++ H
  SMil_00024006-RA_Salv  37 KFYKLYAKAYGFEVRMGTKERA-KDGTVRMHYALCNRQGVWAYADAS-RINPHTKKRRTTSCKANCMARAIFqvtTGGYYIRTFNEGH 122
                            6****************99998.77779999999******9999988.44444444445555555444443333499*********** PP

                   FAR1  86 nHela 90 
                            +H++a
  SMil_00024006-RA_Salv 123 SHSMA 127
                            **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.2E-1137127IPR004330FAR1 DNA binding domain
PfamPF105512.1E-27182273IPR018289MULE transposase domain
PROSITE profilePS509669.903419458IPR007527Zinc finger, SWIM-type
PfamPF044344.6E-4428450IPR007527Zinc finger, SWIM-type
SMARTSM005750.0036433460IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MADDSSSSIA KLCFPKVEDS RIPHTGQMFA NLHDGVKFYK LYAKAYGFEV RMGTKERAKD  60
GTVRMHYALC NRQGVWAYAD ASRINPHTKK RRTTSCKANC MARAIFQVTT GGYYIRTFNE  120
GHSHSMANIG PMHTFRMVRE MVGSYKGVGC TSTDFKNYVR DLKVYNKDEI SIKNFKTFGE  180
AISFDVTYNT NRYKLIFTPF TGRDNHGKCI SFGAALISKE DTESYSWVLD KFVQIMGRAP  240
RLIITDQDPG LKRAVSSSWK DARHRYCMWH ISMKVAKKVP IRLRDDQDYK SKFENIIWSD  300
HEDPDAFEEN WNNMIDEYEL SDNRWFSDMF EDRMFWVPAY FRNVSMSGLF RTTSCSESEN  360
SFFKRFINKN ADLVLLYKNY GSALDAQRNS YFETTHADET RRPRMVTNLP IEDHASTVYT  420
NAIFKETQSE DDLTCTCNLF NRKGYLCRHV FLVIINSQCD KIPQKYISLR WCKFSLLCPG  480
EAQSELHNEY SQDSSNEEFR YFKIVGEIIP HIRLNEDLKN QFFADLMELK NKFSNTGCME  540
QTSVAKKRRF EKFYGAAPTD SPSVMPPDIS RTKGSGVGGR RKSDQEKAIL LAKKPMRLCR  600
KCQTKGHHDS RNCPTKQATN I
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1268424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-51FAR1-related sequence 5